Marcus Oswald

Dr. Marcus Oswald

Network Modeling

Phone: +49 3641 532-1288 Fax: +49 3641 532-2288 Email:


Saraiva JP, Oswald M, Biering A, Röll D, Assmann C, Klassert T, Blaess M, Czakai K, Claus R, Löffler J, Slevogt H, König R. (2017) Fungal biomarker discovery by integration of classifiers. BMC Genomics 18, 601. Details

Kordaß T, Weber CEM, Oswald M, Ast V, Bernhardt M, Novak D, Utikal J, Eichmüller SB, König R. (2016) SOX5 is involved in balanced MITF regulation in human melanoma cells BMC Medical Genomics, 9(1):10. , Details

Poos AM, Maicher A, Dieckmann AK, Oswald M, Eils R, Kupiec M, Luke B, König R (2016) Mixed Integer Linear Programming based machine learning approach identifies regulators of telomerase in yeast Nucleic Acids Research, 44, e93 , Details

Saraiva J, Oswald M, Biering A, Assmann C, Klassert T, Blaess M, Czakai K, Claus R, Löffler J, Slevogt H, König R (2016) Integrating classifiers across datasets improves consistency of biomarker predictions in sepsis. In: Proceedings of the 6th IFAC Conference on Foundations of Systems Biology in Engineering 6th IFAC Conference on Foundations of Systems Biology in Engineering, Magdeburg, 10/09/2016-10/12/2016, pp. 95-102.Elsevier ScienceDirect. Details Open Access

Piro RM, Wiesberg S, Schramm G, Rebel N, Oswald M, Eils R, Reinelt G, König R (2014) Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling. BMC Syst Biol 8, 56. Details PubMed

Schacht T, Oswald M, Eils R, Eichmüller SB, König R (2014) Estimating the activity of transcription factors by the effect on their target genes. Bioinformatics 30(17), i401-i407. Details PubMed

Suratanee A, Schaefer MH, Betts MJ, Soons Z, Mannsperger H, Harder N, Oswald M, Gipp M, Ramminger E, Marcus G, Männer R, Rohr K, Wanker E, Russell RB, Andrade-Navarro MA, Eils R, König R (2014) Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen. PLoS Comput Biol 10(9), e1003814. Details PubMed

Ummanni R, Mannsperger HA, Sonntag J, Oswald M, Sharma AK, König R, Korf U (2014) Evaluation of reverse phase protein array (RPPA)-based pathway-activation profiling in 84 non-small cell lung cancer (NSCLC) cell lines as platform for cancer proteomics and biomarker discovery. Biochim Biophys Acta 1844(5), 950-959. Details PubMed

Schramm G, Surmann EM, Wiesberg S, Oswald M, Reinelt G, Eils R, König R (2010) Analyzing the regulation of metabolic pathways in human breast cancer. BMC Med Genomics 3, 39. Details PubMed

Schramm G, Wiesberg S, Diessl N, Kranz AL, Sagulenko V, Oswald M, Reinelt G, Westermann F, Eils R, König R (2010) PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways. Bioinformatics 26(9), 1225-1231. Details PubMed

Fatumo S, Plaimas K, Mallm JP, Schramm G, Adebiyi E, Oswald M, Eils R, König R (2009) Estimating novel potential drug targets of Plasmodium falciparum by analysing the metabolic network of knock-out strains in silico. Infect Genet Evol 9(3), 351-358. Details PubMed

Plaimas K, Mallm JP, Oswald M, Svara F, Sourjik V, Eils R, König R (2008) Machine learning based analyses on metabolic networks supports high-throughput knockout screens. BMC Syst Biol 2, 67. Details PubMed

König R, Schramm G, Oswald M, Seitz H, Sager S, Zapatka M, Reinelt G, Eils R (2006) Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms. BMC Bioinformatics 7, 119. Details PubMed