Transcriptomics

giCDF – Custom CDFs

In this tutorial we will use new designed Chip Definition Files (CDFs) for various Affymetrix oligonucleotide microarrays.

MAID – Gene Filtering

In this tutorial we will pre-process human Affymetrix data and filter significantly regulated genes using MAID (MA-plot-based signal intensity-dependent fold-change criterion)...

Probe Selection

Probe selection for pathway-specific microarray probe design minimizing melting temperature variance