Marfil-Sánchez A^*, Zhang L^*, Alonso-Pernas P, Mirhakkak M, Mueller M, Seelbinder B, Ni Y, Santhanam R, Busch A, Beemelmanns C, Ermolaeva M, Bauer M^#, Panagiotou G^# (2021) An integrative understanding of the large metabolic shifts induced by antibiotics in critical illness. Gut Microbes 13(1), 1993598.

Seelbinder B, Chen J, Brunke S, Vazquez-Uribe R, Santhanam R, Meyer AC, de Oliveira Lino FS, Chan KF, Loos D, Imamovic L, Tsang CC, Lam RP, Sridhar S, Kang K, Hube B, Woo PCY, Sommer MOA, Panagiotou G (2020) Antibiotics create a shift from mutualism to competition in human gut communities with a longer-lasting impact on fungi than bacteria. Microbiome 8(1), 133.

Santhanam R, Menezes RC, Grabe V, Li D, Baldwin IT, Groten K (2019) A suite of complementary biocontrol traits allows a native consortium of root-associated bacteria to protect their host plant from a fungal sudden-wilt disease. Mol Ecol ,

Santhanam R, Oh Y, Kumar R, Weinhold A, Luu VT, Groten K, Baldwin IT (2017) Specificity of root microbiomes in native-grown Nicotiana attenuata and plant responses to UVB increase Deinococcus colonization. Mol Ecol 26(9), 2543-2562.

Aizenberg-Gershtein Y, Izhaki I, Santhanam R, Kumar P, Baldwin IT, Halpern M (2015) Pyridine-type alkaloid composition affects bacterial community composition of floral nectar. Sci Rep 5, 11536.

Groten K, Nawaz A, Nguyen NH, Santhanam R, Baldwin IT (2015) Silencing a key gene of the common symbiosis pathway in Nicotiana attenuata specifically impairs arbuscular mycorrhizal infection without influencing the root-associated microbiome or plant growth. Plant Cell Environ 38(11), 2398-2416.

Santhanam R, Luu VT, Weinhold A, Goldberg J, Oh Y, Baldwin IT (2015) Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping. Proc Natl Acad Sci U S A 112(36), E5013-E5020.

Santhanam R, Groten K, Meldau DG, Baldwin IT (2014) Analysis of plant-bacteria interactions in their native habitat: bacterial communities associated with wild tobacco are independent of endogenous jasmonic acid levels and developmental stages. PLOS One 9(4), e94710.

Rateb M, Hallyburton I, Houssen WE, Bull A, Goodfellow M, Santhanam R, Jaspars M, Ebel R (2013) Induction of diverse secondary metabolites in Aspergillus fumigatus by microbial co-culture RSC Advances 34(3), 14444-14450.

Santhanam R, Rong X, Huang Y, Andrews BA, Asenjo JA, Goodfellow M (2013) Streptomyces bullii sp. nov., isolated from a hyper-arid Atacama Desert soil. Antonie Van Leeuwenhoek 103(2), 367-373.