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Singh DD, Hawkins RD, Lahesmaa R, Tripathi SK (2019) CRISPR/Cas9 guided genome and epigenome engineering and its therapeutic applications in immune mediated diseases. Semin Cell Dev Biol 96, 32-43.

Tripathi SK, Välikangas T, Shetty A, Khan MM, Moulder R, Bhosale SD, Komsi E, Salo V, De Albuquerque RS, Rasool O, Galande S, Elo LL, Lahesmaa R (2019) Quantitative Proteomics Reveals the Dynamic Protein Landscape during Initiation of Human Th17 Cell Polarization. iScience 11, 334-355.

Ubaid Ullah SBA, Andrabi SK, Tripathi O, Dirasantha K, Kanduri S, Rautio CC, Gross S, Lehtimäki K, Bala J, Tuomisto U, Bhatia D, Chakroborty LL, Elo H, Lähdesmäki H, Wiendl O, Rasool R, Lahesmaa (2018) Transcriptional Repressor HIC1 Contributes to Suppressive Function of Human Induced Regulatory T Cells. Cell Rep 22(8), 2094-2106.

Tripathi SK, Chen Z, Larjo A, Kanduri K, Nousiainen K, Äijo T, Ricaño-Ponce I, Hrdlickova B, Tuomela S, Laajala E, Salo V, Kumar V, Wijmenga C, Lähdesmäki H, Lahesmaa R (2017) Genome-wide Analysis of STAT3-Mediated Transcription during Early Human Th17 Cell Differentiation. Cell Rep 19(9), 1888-1901.

Tuomela S, Rautio S, Ahlfors H, Öling V, Salo V, Ullah U, Chen Z, Hämälistö S, Tripathi SK, Äijö T, Rasool O, Soueidan H, Wessels L, Stockinger B, Lähdesmäki H, Lahesmaa R (2016) Comparative analysis of human and mouse transcriptomes of Th17 cell priming. Oncotarget 7(12), 13416-13428.

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Kanduri K, Tripathi S, Larjo A, Mannerström H, Ullah U, Lund R, Hawkins RD, Ren B, Lähdesmäki H, Lahesmaa R (2015) Identification of global regulators of T-helper cell lineage specification. Genome Med 7, 122.

Äijö T, Butty V, Chen Z, Salo V, Tripathi S, Burge CB, Lahesmaa R, Lähdesmäki H (2014) Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation. Bioinformatics 30(12), i113-i120.

Hrdlickova B, Kumar V, Kanduri K, Zhernakova DV, Tripathi S, Karjalainen J, Lund RJ, Li Y, Ullah U, Modderman R, Abdulahad W, Lähdesmäki H, Franke L, Lahesmaa R, Wijmenga C, Withoff S (2014) Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity. Genome Med 6(10), 88.