Applied Systems Biology

Schälte Y^*, Fröhlich F^*, Jost PJ^*, Vanhoefer J^*, Pathirana D, Stapor P, Lakrisenko P, Wang D, Raimúndez E, Merkt S, Schmiester L, Städter P, Grein S, Dudkin E, Doresic D, Weindl D, Hasenauer J^# (2023) pyPESTO: a modular and scalable tool for parameter estimation for dynamic models. Bioinformatics 39(11), btad711.

Svensson CM^*, Reglinski K^*, Schliebs W, Erdmann R, Eggeling C^#, Figge MT^# (2023) Quantitative analysis of peroxisome tracks using a Hidden Markov Model. Sci Rep 13(1), 19694.

Belyaev I^*, Marolda A^*, Praetorius JP, Sarkar A, Medyukhina A, Hünniger K, Kurzai O, Figge MT (2022) Automated characterisation of neutrophil activation phenotypes in ex vivo human Candida blood infections. Comput Struct Biotechnol J 20, 2297-2308.

Engels G, Forster J, Streng A, Rücker V, Rudolph P, Pietsch F, Wallstabe J, Wallstabe L, Krauthausen M, Schmidt J, Ludwig T, Bauer C, Gierszewski D, Bendig J, Timme S, Jans T, Weißbrich B, Romanos M, Dölken L, Heuschmann P, Härtel C, Gágyor I, Figge MT, Liese J, Kurzai O (2022) Acceptance of different self-sampling methods for semiweekly SARS-CoV-2 testing in asymptomatic children and childcare workers at German Day Care Centers: A nonrandomized controlled trial. JAMA Netw Open 5(9), e2231798.

Fathian A, Jamali Y^#, Raoufy MR et al. (2022) The trend of disruption in the functional brain network topology of Alzheimer’s disease. Sci Rep 12(1), 14998.

Forster J, Streng A, Rudolph P, Rücker V, Wallstabe J, Timme S, Pietsch F, Hartmann K, Krauthausen M, Schmidt J, Ludwig T, Gierszewski D, Jans T, Engels G, Weißbrich B, Romanos M, Dölken L, Heuschmann P, Härtel C, Gágyor I, Figge MT, Kurzai O, Liese J (2022) Feasibility of SARS-CoV-2 surveillance testing among children and childcare workers at German Day Care Centers: A nonrandomized controlled trial. JAMA Netw Open 5(1), e2142057.

Hoang TNM^*, Cseresnyés Z^*, Hartung S^*, Blickensdorf M, Saffer C, Rennert K, Mosig AS, von Lilienfeld-Toal M, Figge MT (2022) Invasive aspergillosis-on-chip: A quantitative treatment study of human Aspergillus fumigatus infection. Biomaterials 283, 121420.

Hoffmann B^*, Gerst R^*, Cseresnyés Z, Foo W, Sommerfeld O, Press AT, Bauer M, Figge MT (2022) Spatial quantification of clinical biomarker pharmacokinetics through deep learning-based segmentation and signal-oriented analysis of MSOT data. Photoacoustics 26, 100361.

Richter I, Radosa S, Cseresnyés Z, Ferling I, Büttner H, Niehs SP, Gerst R, Scherlach K, Figge MT, Hillmann F, Hertweck C (2022) Toxin-producing endosymbionts shield pathogenic fungus against micropredators. mBio 13(5), e0144022.

Sarkar A (2022) Explainable aI and its applications in healthcare. In: Mehta M, Palade V, Chatterjee I (eds.) Explainable AI: Foundations, Methodologies and Applications. 232, pp. 111-133. Springer. ISBN: 3031128079, 978. (Review)