(2025)
Intuitive Abläufe für die automatisierte Bildanalyse. JIPipe als quelloffene Softwarelösung für FAIRe Bildanalyse.
Online-Publikation bei Wiley Analytical Science
Curriculum vitae
Main Research Areas
- JIPipe: towards a FAIR desktop image analysis workflow management tool
Professional Career
| since 2022 | Postdoctoral researcher in the group Applied Systems Biology at the Hans Knöll Institute |
| 2022 | PhD in Bioinformatics at the Hans Knöll Institute |
| 2018 | M.Sc. in Bioinformatics at the Friedrich Schiller University Jena |
| 2015 | B.Sc. in Bioinformatics at the Friedrich Schiller University Jena |
Publications
(2025)
Intuitive workflows for automated image analysis - JIPipe as an open-source tool for FAIR image analysis.
Microsc Anal 39(1),
45-47.
(2024)
NFDI4BIOIMAGE - National research data infrastructure for microscopy and bioimage analysis.
Zenodo ,
10.3389/fimmu.2024.1432307.
(Review)
(2024)
The global RNA–RNA interactome of Klebsiella pneumoniae unveils a small RNA regulator of cell division.
Proc Natl Acad Sci U S A 121(9),
e2317322121.
(2023)
Evaluation of reproducible cryogel preparation based on automated image analysis using deep learning.
J Biomed Mater Res A 111(11),
1734-1749.
(2023)
JIPipe: Visual batch processing for ImageJ.
Nat Methods 20(2),
168-169.
(2022)
Spatial quantification of clinical biomarker pharmacokinetics through deep learning-based segmentation and signal-oriented analysis of MSOT data.
Photoacoustics 26,
100361.
(2022)
Toxin-producing endosymbionts shield pathogenic fungus against micropredators.
mBio 13(5),
e0144022.
(2021)
Bacterial endosymbionts protect beneficial soil fungus from nematode attack.
Proc Natl Acad Sci U S A 118(37),
e2110669118.
(2020)
MISA++: A standardized interface for automated bioimage analysis.
SoftwareX 11,
100405.
