(2025)
Intuitive Abläufe für die automatisierte Bildanalyse. JIPipe als quelloffene Softwarelösung für FAIRe Bildanalyse.
Online-Publikation bei Wiley Analytical Science
Dr. Zoltán Cseresnyés
Applied Systems Biology · PolyTarget +49 3641 532-1532 zoltan.cseresnyes@leibniz-hki.deCurriculum vitae
Main Research Areas
- Intravital 2-photon microscopy of the immune system
- Software development for automated and advanced image analysis and model-based simulations
- Image-based Systems Biology
Professional Career
| since 2016 | Research associate, imaging and image analysis specialist at the Hans Knoell Institute, Jena |
| 2016-2016 | Microscopy and imaging specialist at the Deutsches Rheuma-Forschungszentrum (DRFZ) and the Beuth Hochschule, Berlin |
| 2012-2016 | Microscopy and imaging specialist in the JIMI (Joint Intravital Microscopy and Imaging) project at the Deutsches Rheuma-Forschungszentrum, Max Delbrück Center (Berlin) and at the Hans Knoell Institute, Jena |
| 2010-2012 | Research associate and Co-manager of the Confocal and 2-Photon Microscopy Core Facility at Max Delbrück Center for Molecular Medicine in Berlin |
| 2007-2010 | Imaging Facility manager in the Department of Zoology at the University of Cambridge (GB) |
| 1994-2007 | Research associate and confocal imaging specialist in the Department of Biochemistry and Molecular Biology at the University of Maryland Baltimore (USA) |
| 1991-1994 | Research associate in the Department of Physiology at the School of Medicine at Debrecen University (HU) |
| 1985-1991 | Research associate in the Department of Solid State Physics at Debrecen University (HU) |
Publications
(2025)
Intuitive workflows for automated image analysis - JIPipe as an open-source tool for FAIR image analysis.
Microsc Anal 39(1),
45-47.
(2025)
Convergent evolution of a fungal effector enabling phagosome membrane penetration.
bioRxiv
[Preprint]
(2024)
The proteomic response of Aspergillus fumigatus to Amphotericin B (AmB) reveals the involvement of the RTA-like protein RtaA in AmB resistance.
microLife 6,
uqae024.
(2024)
Selective uptake into inflamed human intestinal tissue and immune cell targeting by wormlike polymer micelles.
Small 20(21),
2470162.
(2024)
Aspergillus fumigatus-derived gliotoxin impacts innate immune cell activation through modulating lipid mediator production in macrophages.
Immunology 173(4),
748-767.
(2024)
The spatial organization of sphingofungin biosynthesis in Aspergillus fumigatus and its cross-interaction with sphingolipid metabolism.
mBio 15(3),
e0019524.
(2024)
Tracking the uptake of labelled host-derived extracellular vesicles by the human fungal pathogen Aspergillus fumigatus.
microLife 5,
uqae022.
(2023)
Hydrophilic cryogels as potential 3D cell culture materials: Synthesis and characterization of 2-(methacrylamido) glucopyranose-based polymer scaffolds.
J Polym Sci 61(23),
3039-3054.
(2023)
Evaluation of reproducible cryogel preparation based on automated image analysis using deep learning.
J Biomed Mater Res A 111(11),
1734-1749.
