König R, Baldessari D, Pollet N, Niehrs C, Eils R (2004) Reliability of gene expression ratios for cDNA microarrays in multiconditional experiments with a reference design. Nucleic Acids Res 32(3), e29.

König R, Eils R (2004) Gene expression analysis on biochemical networks using the Potts spin model. Bioinformatics 20(10), 1500-1505.

Vinayagam A, König R, Moormann J, Schubert F, Eils R, Glatting KH, Suhai S (2004) Applying Support Vector Machines for Gene Ontology based gene function prediction. BMC Bioinformatics 5, 116.

König R, Dandekar T (2001) Solvent entropy-driven searching for protein modeling examined and tested in simplified models. Protein Eng 14(5), 329-335.

König R, Dandekar T (1999) Improving genetic algorithms for protein folding simulations by systematic crossover. Biosystems 50(1), 17-25.

Dandekar T, König R (1997) Computational methods for the prediction of protein folds. Biochim Biophys Acta 1343(1), 1-15. (Review)