
Dr. Thomas Wolf
Systems Biology and Bioinformatics
- Networks of host-fungal pathogen interaction
- Prediction of gene regulatory elements in fungi
(2020) Comparative transcriptomic analysis of rhinovirus and influenza virus infection. Front Microbiol 11(1580), 1-13. Details PubMed Open Access PDF
(2020) Survival strategies of pathogenic Candida species in human blood show independent and specific adaptations. mBio 11(5), e02435-20. Details PubMed
(2020) Triple RNA-seq reveals synergy in a human virus-fungus co-infection model. Cell Reports 33(7), 108389. Details PubMed Open Access PDF
(2019) Phagocytic predation by the fungivorous amoeba Protostelium aurantium targets metal ion and redox homeostasis. bioRxiv 690503, preprint. Details Open Access PDF
(2018) Two's company: studying interspecies relationships with dual RNA-seq. Curr Opin Microbiol 42, 7-12. (Review) Details PubMed Open Access PDF
(2017) antiSMASH 4.0 — Improvements in Chemistry Prediction and Gene Cluster Boundary Identification. Nucleic Acids Res 45(W1), W36-W41. Details PubMed Open Access
(2016) Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses BMC Genomics 17(1), 953. Details Open Access
(2016) Draft Genome Sequence of Shewanella sp. P1-14-1, a Bacterial Inducer of Settlement and Morphogenesis in Larvae of the Marine Hydroid Hydractinia Echinata Genome Announc 4(1), e00003-16. Details PubMed
(2016) 15 Genetic and metabolic aspects of primary and secondary metabolism of the Zygomycetes In: Hoffmeister D. (eds) Biochemistry and Molecular Biology (ed.) The Mycota Vol. III: 3rd edition. III, pp. 361-385. Springer Verlag, Berlin, Heidelberg, New York. (Review) Details Open Access PDF
(2015) Genome Sequences of Three Pseudoalteromonas Strains P1-8, P1-11 and P1-30 Isolated from the Marine Hydroid Hydractinia echinata Genome Announc. 3(6), e01380-15. Details PubMed
(2015) Draft Genome Sequences of Six Pseudoalteromonas sp. Strains P1-7a, P1-9, P1-13-1a, P1-16-1b, P1-25 and P1-26, which Induce Larval Settlement and Metamorphosis in Hydractinia echinata Genome Announc. 3(6), e01477-15. Details PubMed
(2015) CASSIS and SMIPS: Promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes Bioinformatics 32(8), 1138-1143. Details PubMed Open Access
(2014) Microevolution of Candida albicans in macrophages restores filamentation in a nonfilamentous mutant. PLOS Genet 10(12), e1004824. Details PubMed Open Access
(2013) Motif-based method for genome-wide prediction of eukaryotic gene clusters In: A. Petrosino, L. Maddalena, P. Pala (eds.) Lecture Notes in Computer Science (LNCS) 2nd International Workshop on Pattern Recognition in Proteomics, Structural Biology and Bioinformatics, Naples, Italien, 09/09/2013-09/10/2013, 8158, pp. 389-398.Springer-Verlag, Berlin, Heidelberg. Details