Microbiome Dynamics

Linde J, Duggan S, Weber M, Horn F, Sieber P, Hellwig D, Riege K, Marz M, Martin R, Guthke R, Kurzai O (2015) Defining the transcriptomic landscape of Candida glabrata by RNA-Seq. Nucleic Acids Res 43(3), 1392-1406.

Linde J, Schulze S, Henkel SG, Guthke R (2015) Data- and knowledge-based modeling of gene regulatory networks: An update EXCLI Journal - Experimental and Clinical Sciences 14, 346-378.

Macheleidt J, Scherlach K, Neuwirth T, Schmidt-Heck W, Straßburger M, Spraker J, Baccile JA, Schroeder FC, Keller NP, Hertweck C, Heinekamp T, Brakhage AA (2015) Transcriptome analysis of cAMP-dependent protein kinase A regulated genes reveals the production of the novel natural compound fumipyrrole by Aspergillus fumigatus Mol Microbiol 96(1), 148-162.

Mansfeld J, Urban N, Priebe S, Groth M, Frahm C, Hartmann N, Gebauer J, Ravichandran M, Dommaschk A, Schmeisser S, Kuhlow D, Monajembashi S, Bremer-Streck S, Hemmerich P, Kiehntopf M, Zamboni N, Englert C, Guthke R, Kaleta C, Platzer M, Sühnel J, Witte O, Zarse K, Ristow M (2015) Branched-Chain Amino Acid Catabolism is a Conserved Genetic Regulator of Physiological Aging Nature Communications 6, 10043.

Marthandan S, Priebe S, Groth M, Guthke R, Platzer M, Hemmerich P, Diekmann S (2015) Hormetic effect of rotenone in primary human fibroblasts. Immunity & Ageing 12, 11.

Marthandan S^*, Priebe S^*, Baumgart M, Groth M, Cellerino A, Guthke R, Platzer P, Hemmerich P and Diekmann S (2015) Similarities in gene expression profiles during in vitro aging of primary human embryonic lung and foreskin fibroblasts BioMed Research International 2015, ID 731938.

Prauße MTE, Schäuble S, Guthke R, Schuster S (2015) Computing the various pathways of penicillin synthesis and their molar yields. Biotechnology and Bioengineering 113(1), 173-181.

Priebe S, Kreisel C, Horn F, Guthke R, Linde J (2015) FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species. Bioinformatics 31(3), 445-446.

Reichwald K, Petzold A, Koch P, Downie BR, Hartmann N, Pietsch S, Baumgart M, Chalopin D, Felder M, Bens M, Sahm A, Szafranski K, Taudien S, Groth M, Arisi I, Weise A, Bhatt SS, Sharma V, Kraus JM, Schmid F, Priebe S, Liehr T, Görlach M, Than ME, Hiller M, Kestler HA, Volff JN, Schartl M, Cellerino A, Englert C, Platzer M (2015) Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish. Cell 163(6), 1527-1538.

Schleicher J(+), Conrad T(+), Gustafsson M, Cedersund G, Guthke R, Linde J (2015) Facing the challenges of multiscale modelling of bacterial and fungal pathogen-host interactions Briefings in Functional Genomics 2016, pii: elv064. (Review)