Microbiome Dynamics

Chen J^*, Wang Y^*, Xu A, Panagiotou G^# (2024) The human gut mycobiome and its potential as a regulator of the host’s metabolic health. In: Brakhage AA, Kniemeyer O, Zipfel PF (eds.) The Mycota - Human and Animal Relationships 3. 6, pp. 121-133. Springer, Cham. ISBN: 978-3-031-64852. (Review)

Garcia Lopez A, Albrecht-Eckardt D, Panagiotou G, Schäuble S^# (2024) FungiFun3: systemic gene set enrichment analysis for fungal species. Bioinformatics 40(11), btae620.

Garcia Lopez R^*, Schaeuble S^*, Sae-Ong T, Seelbinder B, Bauer M, Giamarellos-Bourboulis EJ, Singer M, Lukaszewski R, Panagiotou G^# (2024) Risk assessment with gene expression markers in sepsis development. Cell Rep Med 5(9), 101712.

Garcia-Morena D, Fernandez-Cantos MV, Lopez Escalera S, Lok J, Iannone V, Cancellieri P, Maathuis W, Panagiotou G, Aranzamendi C, El Aidy S, Kolehmainen M, El‑Nezami H, Wellejus A, Kuipers OP (2024) In-vitro influence of specific Bacteroidales strains on gut and liver health related to Metabolic dysfunction-associated fatty liver disease. Probiotics Antimicrob Proteins [Epub ahead of print]

Hedin KA, Mirhakkak MH, Vaaben TH, Sands C, Pedersen M, Baker A, Vazquez-Uribe R, Schäuble S, Panagiotou G^#, Wellejus A^#, Sommer MOA^# (2024) Saccharomyces boulardii enhances anti-inflammatory effectors and AhR activation via metabolic interactions in probiotic communities. ISME Journal 18(1), wrae212.

Heilig L, Fariha N, Trinks N, Aimanianda V, Wong SSW, Fontaine T, Terpitz U, Strobel L, Lemauff F, Sheppard D, Schaeuble S, Kurzai O, Hünniger K, Weiss E, Vargas M, Howell PL, Panagiotou G, Wurster S, Einsele H, Löffler J (2024) CD56-mediated activation of human natural killer cells is triggered by Aspergillus fumigatus galactosaminogalactan. PLOS Pathog 20(6), e1012315.

Houttu V^*, Boulund U^*, Troelstra M, Csader S, Stols-Gonçalves D, Mak AL, Dijk AMv, Bouts J, Winkelmeijer M, Verdoes X, van den Berg-Faay S, Lek D, Ronteltap T, de Haan F, Jorstad H, Männistö V, Savonen K, Pentikäinen H, Hanhineva K, Babu AF, Panagiotou G, van Delden O, Verheij J, Doukas M, Nederveen A, Schwab U, Grefhorst A, Nieuwdorp M, Holleboom AG^# (2024) Deep phenotyping of patients with MASLD upon high-intensity interval training. JHEP Reports 7(3), 101289.

Li H^*, Zhang L^*, Li J^*, Wu Q^*, Qian L, He J, Ni Y, Kovatcheva-Datchary P, Yuan R, Liu S, Shen L, Zhang M, Sheng B, Li P, Kang K, Wu L, Fang Q, Long X, Liu X, Wang X, Li Y, Ye Y, Ye J, Bao Y, Zhao Y, Xu G, Panagiotou G^#, Xu A^#, and Jia W^# (2024) Resistant starch intake facilitates weight loss in humans by reshaping the gut microbiota. Nat Metab 6(3), 578-597.

Loos D^*, Pereira da Costa Filho A^*, Dutilh B E, Barber AE^#, Panagiotou G^# (2024) A global survey of host, aquatic, and soil microbiomes reveals shared abundance and genomic features between bacterial and fungal generalists. Cell Rep 43(4), 114046.

McIlroy SE^#, Guibert I, Archana A, Chung WYH, Duffy JE, Gotama R, Hui J, Knowlton N, Leray M, Meyer C, Panagiotou G, Paulay G, Russell B, Thompson PD, Baker DM ^# (2024) Life goes on: Spatial heterogeneity promotes biodiversity in an urbanized coastal marine ecosystem. Glob Chang Biol 30(4), e17248.