(2026)
Automated imaging of cultured bacteria in picoliter droplets by coherent anti-stokes raman scattering and two-photon excited fluorescence microscopy.
J Raman Spectrosc ,
Prof. Dr. Miriam Agler-Rosenbaum
Bio Pilot Plant · Head of Department +49 3641 532-1120 miriam.rosenbaum@leibniz-hki.deCurriculum vitae
Main Research Areas
- Bioelectrochemical Systems
- Defined Microbial Mixed Cultures
- Droplet Microfluidics for Microbial Applications
Professional Career
| Since 2017 | Chair of Synthetic Biotechnology at Friedrich Schiller University Jena and Head of Bio Pilot Plant, Leibniz Institute for Natural Product Research and Infection Biology, (HKI) Jena |
| 2011-2017 | Junior professor in the field of Microbiology of Defined Mixed Cultures, Institute of Applied Microbiology, RWTH Aachen University, Germany |
| 2009-2011 | Research Associate/Sub-Group Leader Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA |
| 2007-2008 | Post-Doc, Washington University in St. Louis, USA |
| 2004-2006 | PhD Studies, University of Greifswald, Germany |
| 1999-2004 | Diploma Studies in Biochemistry University of Greifswald |
Awards · Appointments · Scientific Activities
| Since 2021 | Ombudsperson at the HKI |
| 2019 | ERC Consolidator Grant “e-Microbe“ |
| 2017 | f-Cell Award for innovative fuel cell technology for the BMBF-funded project TexKoMBZ |
| Since 2014 | Representative of the International Society for Microbial Electrochemistry and Technology, ISMET |
| 2004-2006 | Fellowship of the Fond der Chemischen Industrie |
Publications
(2026)
Probing antibiotic inhibition in small bacterial populations with combinatorial droplet microfluidics.
Small Sci 6(1),
e202500421.
(2025)
Biochemical production with microbial bioelectrochemical systems.
Curr Opin Biotechnol 93,
103291.
(Review)
(2025)
Evaluation of yeast alcohol acetyltransferases for ethyl acetate production in Clostridium ljungdahlii.
Eng Life Sci 25(1),
e202400076.
(2025)
Fluorescence-based online monitoring enables differentiation in Co-cultures of untagged Streptomyces species and Trichoderma reesei.
Appl Biochem Biotechnol 197(11),
7276-7295.
(2025)
Multiplexed, rapid phenotypic antibiotic susceptibility testing based on angle-resolved light scattering imaging of microfluidic droplets.
J Adv Res S2090-1232(25),
00751-9.
(2025)
Rapid detection of microbial antibiotic susceptibility via deep learning supported analysis of angle-resolved scattered-light images of picoliter droplet cultivations.
Sens Actuators B Chem 424,
136866.
(2025)
A droplet microfluidic strategy for cultivation, investigation, and high-throughput isolation of mouse gut microbiome bacteria.
Appl Environ Microbiol 91(8),
e0069525.
(2025)
Reducing oxygen stress and improving hydrogen availability boosts microbial electrosynthesis by Clostridium ljungdahlii.
ChemSusChem 18(21),
e202501118.
(2025)
Pilot scale production of a F420 precursor under microaerobic conditions.
Biotechnol J 20(3),
e70002.
