Carl-Magnus Svensson

Dr. Carl-Magnus Svensson

Applied Systems Biology · DropCode

Phone: +49 3641 532-1088 Fax: +49 3641 532-2088 Email: carl-magnus.svensson@leibniz-hki.de

Main Research Areas
  • signal and data analysis
  • analysis of medical and microscopy images using computer vision approaches
  • statistical modeling and machine learning
Curriculum vitae

Professional Career

since 2012 Postdoctoral researcher in the Applied Systems Biology group, Hans Knöll Institute, Jena, Germany.
2011-2012 Postdoctoral researcher in the group Computational Neuroscience and Machine Learning at Frankfurt Institute for Advanced Studies (FIAS) in Frankfurt am Main
2009-2011 Postdoctoral researcher in the Visual Neuroscience group at the School of Psychology at the University of Nottingham (GB)
2009 PhD in Applied Mathematics at the University of Nottingham (GB)
2005 M.Sc. in Engineering Physics at the Royal Institute of Technology in Stockholm (SWE)
Publications

Campagner A, Ciucci D, Svensson CM, Figge MT, Cabitza F (2021) Ground truthing from multi-rater labeling with three-way decision and possibility theory. Information Sciences 545, 771-790. Details

Shopova IA, Belyaev I, Dasari P, Jahreis S, Stroe MC, Cseresnyés Z, Zimmermann AK, Medyukhina A, Svensson CM, Krüger T, Szeifert V, Nietzsche S, Conrad T, Blango MG, Kniemeyer O, von Lilienfeld-Toal M, Zipfel PF, Ligeti E, Figge MT, Brakhage AA (2020) Human neutrophils produce antifungal extracellular vesicles against Aspergillus fumigatus. mBio 11(2), e00596-20. Details PubMed Open Access PDF Supplement

Hirth G, Svensson CM, Böttcher K, Ullrich S, Figge MT, Jungnickel B (2019) Regulation of the germinal center reaction and somatic hypermutation dynamics by homologous recombination. J Immunol 203(6), 1493-1501. Details PubMed

Kresinsky A, Schnöder TM, Jacobsen ID, Rauner M, Hofbauer LC, Ast V, König R, Hoffmann B, Svensson CM, Figge MT, Hilger I, Heidel FH, Böhmer FD, Müller JP (2019) Lack of CD45 in FLT3-ITD mice results in a myeloproliferative phenotype, cortical porosity, and ectopic bone formation. Oncogene 38(24), 4773-4787. Details PubMed

Svensson CM*, Shydkiv O*, Dietrich S, Mahler L, Weber T, Choudhary M, Tovar M, Figge MT**, Roth M**; *authors contributed equally; *corresponding authors; **authors contributed equally (2019) Coding of experimental conditions in microfluidic droplet assays using colored beads and machine learning supported image analysis. Small 15(4), e1802384. Details PubMed

Svensson CM, Figge MT (2019) Künstliche Intelligenz für die biomedizinische Bildgebung. GIT Labor-Fachzeitschrift , Details Open Access PDF

Tuchscherr L, Pöllath C, Siegmund A, Deinhardt-Emmer S, Hörr V, Svensson CM, Figge MT, Monecke S, Löffler B (2019) Clinical S. aureus isolates vary in their virulence to promote adaptation to the host. Toxins 11(3), 135. Details PubMed Open Access PDF Supplement

Allert S*, Förster TM*, Svensson CM, Richardson JP, Pawlik T, Hebecker B, Rudolphi S, Juraschitz M, Schaller M, Blagojevic M, Morschhäuser J, Figge MT, Jacobsen ID, Naglik JR, Kasper L, Mogavero S, Hube B; *authors contributed equally (2018) Candida albicans-induced epithelial damage mediates translocation through intestinal barriers. mBio 9(3), e00915. Details PubMed Open Access

Svensson CM, Medyukhina A, Belyaev I, Al-Zaben N, Figge MT (2018) Untangling cell tracks: Quantifying cell migration by time lapse image data analysis. Cytometry A 93(3), 357-370. Details PubMed Open Access PDF

Dudeck J*, Medyukhina A*, Froebel J, Svensson C-M, Kotrba J, Gerlach M, Gradtke A-C, Schröder B, Speier S, Figge MT**, Dudeck A**; *authors contributed equally; **corresponding authors, authors contributed equally (2017) Mast cells acquire MHCII from dendritic cells during skin inflammation. J Exp Med 214(12), 3791-3811. Details PubMed

Hoffmann B*, Svensson C-M*, Straßburger M, Gebser B, Irmler IM, Kamradt T, Saluz HP, Figge MT, *authors contributed equally (2017) Automated quantification of early bone alterations and pathological bone turnover in experimental arthritis by in vivo PET/CT imaging. Sci Rep 7, 2217. Details PubMed Open Access PDF

Svensson C-M*, Hoffmann B*, Irmler I, Straßburger M, Figge MT**, Saluz HP**; *authors contributed equally; **corresponding authors, authors contributed equally (2017) Quantification of arthritic bone degradation by analysis of 3D micro-computed tomography data. Sci Rep 7, 44434. Details PubMed Open Access PDF Supplement

Svensson C-M, Bondoc K G, Pohnert G, Figge MT (2017) Segmentation of clusters by template rotation expectation maximization. Comput Vis Image Underst 152, 64-72. Details Open Access

Hussain Z, Svensson C-M, Besle J, Webb BS, Barrett BT, McGraw PV (2015) Estimation of cortical magnification from positional error in normally sighted and amblyopic subjects. Journal of Vision 15(2), 1-16. Details PubMed Open Access

Kraibooj K*, Schoeler H*, Svensson C-M, Brakhage AA, Figge MT (2015) Automated quantification of the phagocytosis of Aspergillus fumigatus conidia by a novel image analysis algorithm. Frontiers in Microbiology 6(549), *authors contributed equally. Details PubMed Open Access

Svensson C-M, Hübler R, Figge MT (2015) Automated classification of circulating tumor cells and the impact of inter-observer variability on classifier training and performance. Journal of Immunology Research 2015(Article ID 573165), 9. Details PubMed Open Access

Svensson C-M, Krusekopf S, Lücke J, Figge MT (2014) Automated detection of circulating tumor cells with naive Bayesian classifiers. Cytometry A 85(6), 501-511. Details PubMed

Svensson C-M, Coombes S, Peirce JW (2012) Using evolutionary algorithms for fitting high-dimensional models to neuronal data. Neuroinformatics 10(2), 199-218. Details PubMed

Svensson C-M, Coombes S (2009) Mode locking in a spatially extended neuron model: active soma and compartmental tree. Int J Bifurcat Chaos 19(2597), Details Open Access

Coombes S, Timofeeva Y, Svensson C-M, Lord GJ, Josić K, Cox SJ, Colbert CM (2007) Branching dendrites with resonant membrane: a "sum-over-trips" approach. Biol Cybern 97(2), 137-149. Details PubMed